Research group

BiOmics

Bar coded DNA sample

Technological advances have allowed scientists to gather large amounts of data about a vast array of species, organisms and single cells. Our researchers are using mathematical modelling, machine learning and other algorithms to extract information and patterns from large data sets to further our understanding of disease.

About

Contemporary scientific research benefits from rapid technological developments that enable the characterisation and quantification of biological molecules at unprecedented scale. Scientists can generate vast data that provide insight into the complex interplay of molecules within organisms. Interrogation and interpretation of these data inform the structure, function and interaction of molecules over time. 

We use ‘Omic technologies comprehensively to evaluate DNA (genomics), RNA (transcriptomics) and proteins (proteomics). We study small molecules using metabolomics. Microorganisms are investigated in a targeted manner using microbiomics or more broadly to characterise mixed samples using metagenomics.

At the University of Southampton, we generate vast datasets using these approaches across a wide range of environments and species. We work closely with NHS partners to use these capabilities to understand human disease and inform its clinical management. We bring together medical and biological scientists with mathematicians, computer and data scientists to develop and apply methods that exploit these data to their fullest potential.

From analysing patient genomes, to carrying out metagenomic analysis of water samples to using mass spectrometry metabolic profiling techniques, our scientists are studying the unique processes that take place within cells that can lead to disease or poor health outcomes in humans and help track changes in the environment.   

We are using data to answer clinical questions in areas such as cancer, autoimmune and respiratory diseases with the help of clinical colleagues we are translating our findings into novel techniques for clinicians to treat their patients, make predictions about prognosis and drug responsiveness.

Our researchers collaborate with partners at:

People, projects and publications

People

Dr Daniel Spencer

Lecturer
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Dr Daniel Stabler

Lecturer in Plant-Organism Interactions

Accepting applications from PhD students

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Professor Dankmar Böhning

Professor of Medical Statistics

Research interests

  • Meta-analysis
  • Application of capture-recapture methods in Health and Social Science

Accepting applications from PhD students

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Dr Dave Rowe

Senior Research Fellow
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Professor David Baldwin

Professor in Psychiatry
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Professor David Simpson

Prof of Biomedical Signal Processing

Research interests

  • His research interests are in biomedical signal processing with applications in neurophysiology and cardio-vascular and cerebro-vascular control. Specific topics are:
  • Blood flow control in the brain (how does the brain regulate is own blood supply and how to detect impairment of this function).
  • Auditory evoked potentials (methods to detect the small electrical responses of the brain to auditory stimulation for the assessment of various hearing disorders).

Accepting applications from PhD students

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Dr David Toal

Associate Professor

Research interests

  • Design optimisation & automation
  • Machine learning & deep learning
  • Computer aided design
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Dr David Tumbarello

Lecturer in Biomedical Sciences

Research interests

  • Membrane Trafficking
  • Autophagy
  • Mitochondrial Quality Control

Accepting applications from PhD students

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Dr Davide Filingeri BSc, MSc, PGCAP, PhD

Associate Professor

Research interests

  • Davide’s original research programme investigates:
  • i) the biophysical and physiological mechanisms that allow humans to sense changes in the temperature and wetness of their skin.
  • ii) the role of these mechanisms in body temperature regulation and the initiation of thermal behaviours.

Accepting applications from PhD students

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Dr Dean Bryant BSc Hons, PhD, FHEA

Lecturer in Computational Cancer Biology

Accepting applications from PhD students

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We are at a very exciting time in Life Science Research. The potential for novel discovery using ‘omics technologies combined with the computer science methodologies is immense.
Professor of Genomics

Related research institutes, centres and groups

Related research institutes, centres and groups

Contact us

Contact us

Contact the Institute for Life Sciences team by emailing: