Research group

BiOmics

Bar coded DNA sample

Technological advances have allowed scientists to gather large amounts of data about a vast array of species, organisms and single cells. Our researchers are using mathematical modelling, machine learning and other algorithms to extract information and patterns from large data sets to further our understanding of disease.

About

Contemporary scientific research benefits from rapid technological developments that enable the characterisation and quantification of biological molecules at unprecedented scale. Scientists can generate vast data that provide insight into the complex interplay of molecules within organisms. Interrogation and interpretation of these data inform the structure, function and interaction of molecules over time. 

We use ‘Omic technologies comprehensively to evaluate DNA (genomics), RNA (transcriptomics) and proteins (proteomics). We study small molecules using metabolomics. Microorganisms are investigated in a targeted manner using microbiomics or more broadly to characterise mixed samples using metagenomics.

At the University of Southampton, we generate vast datasets using these approaches across a wide range of environments and species. We work closely with NHS partners to use these capabilities to understand human disease and inform its clinical management. We bring together medical and biological scientists with mathematicians, computer and data scientists to develop and apply methods that exploit these data to their fullest potential.

From analysing patient genomes, to carrying out metagenomic analysis of water samples to using mass spectrometry metabolic profiling techniques, our scientists are studying the unique processes that take place within cells that can lead to disease or poor health outcomes in humans and help track changes in the environment.   

We are using data to answer clinical questions in areas such as cancer, autoimmune and respiratory diseases with the help of clinical colleagues we are translating our findings into novel techniques for clinicians to treat their patients, make predictions about prognosis and drug responsiveness.

Our researchers collaborate with partners at:

People, projects and publications

People

Dr Jan Janouskovec PhD

Lecturer in Ecology

Research interests

  • Protist diversity and ecology
  • Evolution of eukaryotic cells
  • Metabolism in plastids & mitochondria

Accepting applications from PhD students

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Professor Jana Kreppner

Professor

Research interests

  • Jana's work focusses on the impact of early experience on development. She is particularly interested in the role of relationship experiences, especially caregiver-child and peer/friend relationships, in typical and atypical development. Jana studies factors that influence relationship experiences as well as the effects and correlates of such relationship experiences on children’s development. Jana uses this knowledge to inform the development of relationship-based interventions to promote children and young people’s wellbeing. Her research has been funded by the ESRC, NIHR, the Waterloo Foundation and the Welcome Trust. Jana's research uses both quantitative and qualitative methods. She has extensive experience conducting longitudinal research across childhood, adolescence and young adulthood. Jana is currently involved in a range of interdisciplinary collaborations which span Psychiatry, Paediatric Neurology, Psychology, Education, Social Work, Public Policy, and Law.
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Dr Jane Cleal PhD

Associate Professor

Research interests

  • Areas of Scientific Expertise:
  • Reproductive Cell Biology – Fundamental mechanisms of cell biology in placenta and endometrium and the impact on the intra-uterine environment, fetal development and lifelong health.Regulation of Reproductive Cell Biology – Maternal exposures and molecular regulation of cellular gene expression, phenotype and function in placenta and endometrium and the clinical translation.Disease/phenotype – Fetal growth, Obesity, Cardiometabolic programming, Subfertility, Recurrent pregnancy loss.Cellular mechanisms – Membrane transport, endocytosis, vesicular transport & signalling, gene transcription, microRNA biology, epigenetic regulation.Vitamin D - Transport, regulation, metabolism and signalling.

Accepting applications from PhD students

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Dr Jane Gibson

Associate Professor
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Professor Jane Lucas MD, PhD, FRCPCH, FERS

Professor of Paediatric Respiratory Med
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Dr Janos Kanczler

Lecturer
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Professor Jasmin Godbold

Professor

Research interests

  • Changes in seafloor biodiversity and ecosystem functioning
  • Effect of human activities and environmental change on species-environment interactions 
  • Trait-expression in benthic invertebrates

Accepting applications from PhD students

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Professor Jaswinder Sethi BSc DPhil FRSB

Professor of Immunometabolism

Research interests

  • Immunometabolism
  • Obesity
  • Metabolic diseases

Accepting applications from PhD students

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Dr Jay Amin BM, MRCPsych, PhD

Assoc Prof in Psychiatry of Older Age

Research interests

  • Developing our understanding of the role of inflammation in Lewy body dementia and Alzheimer's disease, including how it affects disease progression.
  • Undertaking cohort studies exploring clinical outcomes in dementia.
  • Undertaking clinical trials testing novel treatments in dementia.

Accepting applications from PhD students

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Dr Jeff Thompson

Lecturer

Research interests

  • Evolution of animal body plans
  • Macroevolution
  • Molecular Palaeobiology

Accepting applications from PhD students

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We are at a very exciting time in Life Science Research. The potential for novel discovery using ‘omics technologies combined with the computer science methodologies is immense.
Professor of Genomics

Related research institutes, centres and groups

Related research institutes, centres and groups

Contact us

Contact us

Contact the Institute for Life Sciences team by emailing: